The invention discloses a microfluidic high-throughput biological sample drop freezing storage device, comprising a Stirling refrigerator, a heating table, a sample cover, a microfluidic chip, a first syringe pump, a second syringe pump and a programmable controller , the cold end of the Stirling refrigerator is sleeved with a thermal insulation shell, the heating table is arranged in the thermal insulation shell and is in contact with the cold end of the Stirling refrigerator, the upper surface of the heating table is provided with a microporous sample plate, and the The bottom of the well sample plate is provided with a thermocouple, and the heating table is provided with a heating wire; the sample cover is sealed and sleeved on the top of the heating table, and a sample dripper is movably arranged in the sample cover, and the sample dripper is connected to the microcomputer through a hose. In the fluid control chip, the programmable controller controls the sample dropper to drop the mixed solution into the microwells of the microwell sample plate. In the invention, the process of treating biological samples with the vitrification solution and the dribbling process are controlled by the programmable controller, which realizes automatic preservation, improves the operation efficiency, and avoids possible deviations caused by human operation.