The invention discloses a PBP-1A affinity beta-lactam antibiotic electrochemical biological sensor, and a making method and an application thereof. The electrochemical biological sensor is characterized in that the surface of a glassy carbon electrode is commonly modified by graphene, penicillin G and nafion. The making method comprises the steps of bare electrode polishing, cleaning and activating, and concretely comprises: sequentially adding graphene and penicillin G to the surface of the glassy carbon electrode in a dropwise manner, well mixing, carrying out blow drying at 37DEG C, adding nafion in a dropwise manner, naturally air-drying the surface, immersing the electrode in 5wt% bovine serum albumin, placing the immersed electrode in an oven, drying at 37DEG C for 30min, taking out the electrode, washing the electrode with a PBS solution to obtain a glassy carbon electrode with the surface modified by graphene-penicillin G-nafion as a work electrode, placing the work electrode in a system solution, carrying out DPV detection, and determining the concentration of beta-lactam antibiotics in a sample to be detected according to a standard curve. The electrochemical biological sensor has the advantages of high sensitivity, fast detection speed, low detection limit, high efficiency and cheapness.