The invention discloses a tunnel waterproof and water-draining system and a construction method thereof. The tunnel waterproof and water-draining system comprises a water draining layer, a transition layer, a waterproof layer, a transverse water draining pipe, a central water draining pipe and the like, and the water draining layer, the transition layer and the waterproof layer are located between a tunnel primary support and a secondary lining. The water draining layer comprises water-permeable shotcrete, a longitudinal water draining pipe, an annular water draining pipe and a waterstop strip, the longitudinal water draining pipe, the annular water draining pipe and the waterstop strip are fixed to the outer surface of the primary support to carry out water draining partitioning on the primary support, and the water-permeable shotcrete is sprayed in each water draining area. The annular water draining pipe and the central water draining pipe are connected through the transverse water draining pipe, and finally the tunnel water draining system is formed. The transition layer and the waterproof layer are formed by shotcrete with different grades and used for waterproofness of a tunnel. According to the tunnel waterproof and water-draining system and the construction method thereof, the water draining pipes and the water-permeable shotcrete form a tunnel stereoscopic water draining passage, the water draining effect of the tunnel is good, the tunnel waterproof and water-draining system and the structure of the tunnel are integrated, and the long-term service performance is good.