The invention relates to a preparation method of traditional Chinese medicine houttuynia cordata injection, which comprises the following steps: distilling fresh houttuynia cordata with water vapor, collecting coarse distillate, redistilling, collecting heavy distillate, adding 7g of sodium chloride, 5g of polysorbate 80, mixing, adjusting the pH value to be 4.0-6.0 with a pH regulating agent, mixing to be uniform, filtering with a 0.45Mum filter element and a 0.22Mum filter element, filling and sealing, sterilizing for 30 minutes at 105 DEG C, carrying out light inspection, and packaging, thereby preparing the houttuynia cordata injection. The houttuynia cordata injection has the effects of clearing heat, removing toxicity, eliminating carbuncle and abscess, promoting diuresis and treating stranguria, and has significant clinical treatment effects on lung abscess caused by phlegm heat and obstructed lung, urinary tract infection caused by downward flow of dampness-heat, and furuncle and carbuncle caused by heat-toxicity obstruction.