A method is provided for patterning a solid proton conducting electrolyte (22, 60) for a micro fuel cell. The method comprises patterning a first side (30, 63) of a solid proton conducting electrolyte (22, 60) to increase the surface area, coating the patterned first side (22, 60) with an electrocatalyst (33, 66), providing a first electrical conductor (20) to the first side (22, 60), and providing a second electrical conductor (15, 16) to a second side (19) of the solid proton conducting electrolyte (22, 60) opposed to the first side (22, 60). One exemplary embodiment comprises depositing a solid proton conducting electrolyte (60) over a substrate (12), patterning the solid proton conducting electrolyte (60) to form a plurality of pedestals (28), each pedestal (28) having an anode side adjacent a anode region (42) and a cathode side adjacent a cathode region (43), coating the anode (42) and cathode (43) sides with an electrocatalyst (33), providing a first electrical conductor (15, 16) to the anode side (42); and providing a second electrical conductor (20) to the cathode side (43).