The invention provides a multi-channel data acquisition synchronization system. The multi-channel data acquisition synchronization system comprises a GPS timing module, an ARM base board, an information sampling board and a computer, wherein the GPS timing module sends the serial port data of the GPS absolute time and second pulse signals to the ARM base board; the ARM base board receives the serial port data and the second pulse signals, implements multi-channel splitting, and then sends the data and signals to the information sampling board; the information sampling board resolves, records and acquires the data and sends the data to the computer; and the computer receives, stores and reads the data sent by the information sampling board, draws a waveform curve graph, and analyzes the circuit data according to the waveform curve graph. The circuit data is acquired by adopting the multi-channel data acquisition synchronization system provided by the invention, no signal interference exists between each acquisition channel, each channel has a uniform time reference, and thus the data with higher accuracy can be acquired.