The invention relates to the field of multi-source heterogeneous data processing, in particular to a multi-source heterogeneous data unified aggregation method and system, and the system comprises a client, a cloud server and a memory. A data acquisition module is arranged on the client; the cloud server is provided with a data processing module and a data fusion module. The multi-source data information is acquired through the data acquisition module, the data processing module groups and eliminates isomerism of the data, the data pool is manufactured, the data decision model checks the fusion degree of the data in the data pool, meanwhile, the data in the data pool is adjusted until the estimated fusion degree is reached, and then fusion is performed. Unified aggregation of multi-source heterogeneous data is achieved, the aggregation fusion degree is high, invalid data are few, classified storage of a large amount of data is facilitated, and the subsequent query efficiency is effectively improved.