The invention discloses a method for catalytically synthesizing vitamin K2 through NovQ aromatic isopentenyl transferase. The method comprises the steps that 1, vitamin K3 is dissolved in an ethanol aqueous solution, NaBH4 is added, under the protection of N2, the temperature is controlled to be not more than 50 DEG C, stirring reaction is conducted till the system becomes light green transparent liquid, after neutralization is conducted till the pH is 4.0, extraction is conducted on a product with ethyl acetate, after concentration is conducted, freezing crystallization is conducted, clean liquid is filtered, and vitamin K3 hydroquinone is obtained; 2, vitamin K3 hydroquinone and DMAPP are added into an enzymatic reaction system, reaction is conducted under the closed and N2 protection conditions, after the reaction is completed, Fe<3+> is added, N2 protection is removed, after adequate oxidation is conducted, extraction is conducted with ethyl acetate, and the product is obtained. According to the method for catalytically synthesizing the vitamin K2 through the NovQ aromatic isopentenyl transferase, the core link adopts a biological enzyme catalytic engineering technology, and the cheap vitamin K3 is utilized for catalytically synthesizing high-value vitamin K2; the production technology is simple, the production cost is low, and the production process is green and environmentally friendly.