The invention relates to an integrated system and method for accurate measurement of ship dynamic draft, and belongs to the technical field of water survey operations. The invention includes a measuring device integrated on the peripheral support firmware of the ship's side, and a GNSS positioning device and a communication system installed on the ship; the measuring device is used to transmit microwave signals to the water surface, return signals through the water surface scattering, and survey the draft value of the ship Measurement, including microwave transceiver and peripheral support firmware; communication system, used to synchronize microwave ranging data and GNSS acquisition data into the electronic computer; GNSS positioning equipment, used for synchronous acquisition, transmission and recording of microwave ranging data in the electronic computer , Acquisition, recording, and ending are the same as the microwave ranging transmitter and receiver, and are all controlled by electronic computer instructions. The invention is easy to install, convenient to operate, less affected by the external environment, less error influencing factors, high in precision, operable in far and near seas, and strong in application expandability.