There is disclosed a method for identifying a therapeutically responsive
phenotype, as distinguished, e.g. from an alkylating agent
resistant phenotype in a
cell, which method may be used to evaluate the likelihood of successful outcome of treating a tumor
cell with an alkylating agent. The method is directed to the NF-κB activation in response to
DNA damage caused by alkylating agents. It comprises the step of measuring a level of expression of a
protein, which participates in the NF-κB pathway. Preferably it comprises measuring the expression of TNFAIP3 in the
cell, wherein a
resistant phenotype has less expression of TNFAIP3 than a sensitive
phenotype. Another particularly significant
gene, which predicts survival, is NFKBIA. Other genes whose altered expression level is associated with resistance or prognosis are TNIP1, TNIP2, RIP, NFKBIB, Beta4GalNAc-T4, NFKBIE, C8orf4, LIF, CD44, FBXO32, and SDC1, and these are also measured in certain embodiments.