The invention discloses a super junction Schottky semiconductor device. When the semiconductor device is accessed to a certain reverse bias voltage, charge compensation is formed by a second conductive semiconductor material and a first conductive semiconductor material, a super junction structure is formed, the reverse breakdown voltage of the device is enhanced, and characteristics of conduction or blocking of the device are improved. Meanwhile, when the semiconductor device is accessed to a certain forward bias voltage, a first type Schottky barrier junction (assuming that the first conductive semiconductor layer adopts an N type semiconductor material) is in the forward bias conduction state, and a second type Schottky barrier junction (assuming that the second conductive semiconductor layer adopts a P type semiconductor material) is in the reverse bias cut-off state, therefore when in the forward conduction state, the device is still a conductive device with a single carrier, and minority carrier injection does not exist in the conductive device with the single carrier. The device has good switching characteristics. The invention also provides a preparation method of the super junction Schottky semiconductor device.