The invention relates to a method for increasing the signal to noise ratio of a femtosecond laser through an F-P (Fabry-Perol) etalon internally installed with an electro-optic crystal and a device thereof, which belong to the technical field of ultrashort pulses. The method comprises the following steps: firstly, stretching a femtosecond laser pulse to be increased in the signal to noise ratio, which is output from a femtosecond laser light source, into chirp signal light; enabling an instaneous spectral filtering function output by the F-P etalon to be consistent with the chirp size of the chirp signal light by modulating the voltages of both ends of the electro-optic crystal internally installed in the F-P etalon, and thereby, a chirp signal pulse efficiently pass, whereas noise is filtered off to achieve the goal of increasing the signal to noise ratio of the chirp pulse; finally, compressing the chirp signal light into the femtosecond laser with higher signal to noise ratio. The device for realizing the method comprises the femtosecond laser light source, a laser pulse stretcher, the F-P etalon, the electro-optic crystal, a high-voltage pulse power supply, a laser pulse compressor and the like. The signal to noise ratio of the femtosecond laser can be effectively increased by adopting the method and the device. Moreover, the device has simple structure and convenient adjustment.