The invention discloses a low-noise axial plunger pump based on an indexing angle of pumps in series, mainly comprising a main shaft, a bearing, a shell body, a bolt component, a connecting body, an inclined disc, a back-stroke tray, a plunger, a flow distribution plate, a cylinder body and a slippage shoe. The axial plunger pump is provided with two sets of rotor structures which consist of the sliding shoe, the plunger, the cylinder body and the flow distribution plate, an oil sucking hole and an oil discharging hole are shared by two rotor structures, the indexing angle exists between two rotor structures, therefore, a fixed phase difference exists between the dynamic changes of oil discharging quantities of two rotor structures, when two oil flows is converged at the oil discharging hole position, an average effect is generated, the actual exit flow pulsation of the axial plunger pump is reduced by more than 50%, the fluid noise of flow pulsation as a shock excitation source is greatly reduced.