The invention discloses an automated container terminal with multi-automatically guided vehicle path conflict elimination method. The method includes the following steps that: step 1, the path features of the paths of automatically guided vehicles are set; step 2, the paths of the automatically guided vehicles are discretized into feature points and feature directions, wherein the feature points are a limited number of points selected from path trajectories, and the feature directions are the directions of the feature points; step 3, the paths of automatically guided vehicles are dynamically divided, and the feature point set of the paths is divided into four subsets according to a driving sequence, namely, a passed point subset, an occupied point subset, an application point subset and a detection point subset; step 4, feature point conflicts are detected according to an oriented bounding box method; step 5, path conflicts are predicted, and when path conflicts possibly occur, a part of the paths are adjusted, so that the path conflicts can be avoided; step 6, when new automatically guided vehicle paths are generated, and the step 1 and the step 2 are executed for the new automatically guided vehicle paths; and step 7, the step 3 to the step 5 are executed repeatedly according to determined time intervals until the all the automatically guided vehicles arrive at end points and do not run.