The invention discloses a brown yogurt and a preparation method thereof; each 1000 mL of the brown yogurt comprises the following components: 80-130 g of milk powder, 1-20 g of concentrated whey protein powder, 3-20 g of a thickening agent, 20-90 g of white granulated sugar, 0.05-1.5 g of an edible essence, 10-40 g of reducing sugar, 0.1-1 g of pectin, 0.1-0.5 g of an emulsifier, 0.05-0.15 g of lactic acid bacteria, 30-60 g of animal cream, 0.1-1 g of an acidity regulator, and the balance water. The brown yogurt is rich in nutrition, delicate in mouthfeel and unique in flavor; during a Maillard reaction, the pressure is increased, the reaction difficulty is reduced and the energy is saved; and material preparation links are integrated in production, all the raw materials are intensively added before fermentation, production links are reduced, and bacterial infection risks are reduced.