Described is a method for identifying a
gene which mediates
antibiotic sensitivity or resistance in a target bacterium, the method comprising the steps of: (a) generating a
pool of
mutant target
bacteria by transposon
mutagenesis with an activating transposon (TnA), wherein the TnA comprises an outward-facing
promoter (TnAP) capable of increasing transcription of a
gene at or near its
insertion site in the
DNA of said target cells; (b) generating a control microdroplet
library by encapsulating individual members of the
pool of step (a) in microdroplets, the microdroplets comprising a volume of aqueous growth media suspended in an immiscible carrier liquid, each microdroplet comprising a single
mutant target
cell; (c)generating a test microdroplet
library by encapsulating individual members of the
pool of step (a) in microdroplets, the microdroplets comprising a volume of aqueous growth media containing the antibiotic and suspended in an immiscible carrier liquid, each microdroplet comprising a single
mutant target
cell; (d) incubating the control and test microdroplet libraries to produce control and test microcultures; and (e) comparing the distribution of TnA insertions between control and test microcultures to identify a
gene which mediates
antibiotic sensitivity or resistance in said target bacterium.