The invention discloses a production method of a microbial flora for processing ammonia containing wastewater. A microbial flora is placed in a biological reactor to carry out two grade amplification culture. For the first grade amplification culture, ammonium salts and a microbe growth promoter are added in batches. For the second grade amplification culture, at first, ammonium salts are added in batches, then water is changed, ammonium salt addition and water change are carried out alternatively; during ammonium salt addition process, when the concentration of nitration product reaches 3000-6000 mg / L, the water is changed in batches, at the same time, a microbe growth promoter is added; the promoter comprises 40 to 100 parts by weight of metal salts, 5 to 30 parts by weight of polyamine, and 0.5 to 15 parts by weight of inorganic acid hydroxylamine; the metal salts is composed of calcium salts, copper salts, magnesium salts, and / or ferrous salts; and after two grade amplification culture, the bacteria are collected. The production method has the advantages that the culture period is short, the culture efficiency is high, the activity of obtained microbial flora is high, the tolerance is strong, and the ammonia nitrogen containing wastewater can be effectively processed.