The invention discloses a special organic fertilizer for hawthorn trees, and a preparation method thereof, and relates to the technical field of organic fertilizers. The special organic fertilizer for hawthorn trees comprises cow dung, domestic fungus residues, crop straws, sugar residues, soybean meal, sophorolipid, Bacillus subtilis, Streptomyces badius, Pseudomonas aeruginosa, Amur Corktree Bark, fructus cnidii, garlic, Artemisia sieversiana, pyrethrum, tobacco, hairypetal millettia root stem and leaf, and castor-oil plants. The special organic fertilizer for hawthorn trees effectively controls soil borne diseases of the hawthorn trees, and improves the output and the quality of hawthorn fruits.