The invention discloses a method for identifying the genetic relationship by developing an SNP
molecular marker of
miscanthus with the SLAF-seq technology. The method comprises the following steps: (1) designing a marker development scheme; (2) selecting an optimal
digestion scheme; (3) respectively extracting
DNA of genomes for digesting, constructing an SLAF-seq sequencing
library, and sequencing; (4) developing an SLAF marker for a
single sample, then performing similarity clustering on all SLAF markers to obtain an SLAF marker of the cluster; (5) performing
allele number, genetic sequence difference and other polymorphic analysis on the cluster SLAF marker, wherein SNP is taken as a polymorphic marker; (6) coding the
genotype for parent, representing a character by a
genotype, detecting the
daughter genotype after the separation type is determined, and representing the SNP coding genotype with a corresponding character; and (7) selecting SNP marker with few sample loss, extracting all SNP sites, calculating the
daughter SNP anomalous
typing ratio, determining the genetic relationship between
daughter and parent according to whether the daughter SNP anomalous
typing ratio is higher than the threshold value or not.