The invention discloses a method for identifying the genetic relationship by developing an SNP 
molecular marker of 
miscanthus with the SLAF-seq technology. The method comprises the following steps: (1) designing a marker development scheme; (2) selecting an optimal 
digestion scheme; (3) respectively extracting 
DNA of genomes for digesting, constructing an SLAF-seq sequencing 
library, and sequencing; (4) developing an SLAF marker for a 
single sample, then performing similarity clustering on all SLAF markers to obtain an SLAF marker of the cluster; (5) performing 
allele number, genetic sequence difference and other polymorphic analysis on the cluster SLAF marker, wherein SNP is taken as a polymorphic marker; (6) coding the 
genotype for parent, representing a character by a 
genotype, detecting the 
daughter genotype after the separation type is determined, and representing the SNP coding genotype with a corresponding character; and (7) selecting SNP marker with few sample loss, extracting all SNP sites, calculating the 
daughter SNP anomalous 
typing ratio, determining the genetic relationship between 
daughter and parent according to whether the daughter SNP anomalous 
typing ratio is higher than the threshold value or not.