Abstract A
system, method and apparatus for executing a
bioinformatics analysis on genetic sequence data is provided. Particularly, a
genomics analysis platform for executing a
sequence analysis pipeline is provided. The
genomics analysis platform includes one or more of a first
integrated circuit, where each first
integrated circuit forms a
central processing unit (CPU) that is responsive to one or more
software algorithms that are configured to instruct the CPU to perform a first set of genomic
processing steps of the
sequence analysis pipeline. Additionally, a second
integrated circuit is also provided, where each second integrated circuit forming a
field programmable gate array (FPGA), the FPGA being configured by
firmware to arrange a set of hardwired
digital logic circuits that are interconnected by a plurality of physical interconnects to perform a second set of genomic
processing steps of the
sequence analysis pipeline, the set of hardwired
digital logic circuits of each FPGA being arranged as a set of
processing engines to perform the second set of genomic processing steps. A
shared memory is also provided. Abstract A
system, method and apparatus for executing a
bioinformatics analysis on genetic sequence data is provided. Particularly, a
genomics analysis platform for executing a sequence analysis pipeline is provided. The genomics analysis platform includes one or more of a first integrated circuit, where each first integrated circuit forms a
central processing unit (CPU) that is responsive to one or more
software algorithms that are configured to instruct the CPU to perform a first set of genomic processing steps of the sequence analysis pipeline. Additionally, a second integrated circuit is also provided, where each second integrated circuit forming a
field programmable gate array (FPGA), the FPGA being configured by
firmware to arrange a set of hardwired
digital logic circuits that are interconnected by a plurality of physical interconnects to perform a second set of genomic processing steps of the sequence analysis pipeline, the set of hardwired digital logic circuits of each FPGA being arranged as a set of processing engines to perform the second set of genomic processing steps. A
shared memory is also provided. 20 24 20 51 08 25 J ul 2 02 4 2 0 2 4 2 0 5 1 0 8 2 5 J u l 2 0 2 4