The invention provides a multi-channel automated chamber system, comprising an air compressor, an infrared CO2 analyser, a buffer, a drier, a filter, a flowmeter, an air pump, a data acquisition unit and a plurality of chambers, wherein, an air cylinder is arranged between the side wall and an upper cover of each chamber, the air compressor is connected with a multi-ported valve which has a plurality of branches, each branch is provided with an electromagnetic valve, each gas branch is connected with the air cylinder inside each chamber; each chamber is connected with one multi-ported valve by a gas branch provided with an electromagnetic valve and the gas branch is connected in sequence with the buffer, the drier, the filter, the flowmeter, the infrared CO2 analyzer and the air pump and then is connected with another multi-ported valve; each branch of the multi-ported valve is connected with each chamber, each branch is provided with an electromagnetic valve to form a circulating gas path; the infrared CO2 analyzer is connected with the data acquisition unit by a circuit; the electromagnetic valve which is connected with the air cylinder and controls the extension of the air cylinder and the electromagnetic valve which is arranged on the chamber and is used for controlling the circulating gas path are connected with a logic controller by the circuit. The system has the advantages that the reaction speed is high, the efficiency is high, the all-weather continuous and circular detection of a plurality of places is realized, and the influence on the target to be detected is small.