A
genome-wide R-loop detection method, in particular, a
genome-wide R-loop detection method independent of affinity enrichment and a use. According to the
genome-wide R-loop detection method, nucleases are used to perform
enzyme digestion on
genomic DNA fragments, and R-loop detection can be achieved by performing one-step
enzyme digestion simply using a
system of
Nuclease P1, T5
exonuclease, and
Lambda exonuclease. The whole R-loop detection process does not require affinity enrichment or labeling treatment. The method is not only simple and easy to operate, but also can avoid the loss of samples and fragments, thereby reducing the cost and risk of detection, and improving the applicability.