The invention discloses a radar signal parallel processing method and system based on a heterogeneous multinucleated system. The method comprises the following steps: S1, initializing equipment-end parameters, opening up a task execution thread, and dividing thread grids of data processing and the dimensions of a thread block; S2, opening up a video memory space and a memory space which are needed for the signal processing; S3, acquiring data transmission and calculating time needed by signal processing of a single time, and scheduling a genetic task scheduling algorithm to obtain a task scheduling mode; and S4, acquiring laser sampling data for storing in the memory space by means of segments according to a time sequence, sending the data to a CPU and a GPU according to the task scheduling mode, mapping sampling points to each thread and performing concurrent execution according to the thread grids and the dimensions of the thread block, and scheduling a filter coefficient to perform orthogonal phase demodulation, pulse compression, moving object display, moving object detection, pulse accumulation and constant false alarm detection on the sampling data. By applying the method and system provided by the invention, the speed of a general processor in executing the signal processing is improved, and the requirement for real-time performance of radar signal processing is met.