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83 results about "Intact protein" patented technology

Intact Protein Characterization. Full characterization of a protein by mass spectrometry includes determination of the protein sequence, and identification and relative quantitation of protein isoforms, including identification and localization of one or multiple post-translational modifications (PTMs).

Prediction algorithm for recognizing tyrosine posttranslational modification sites

The invention discloses a prediction algorithm for recognizing tyrosine posttranslational modification sites. The algorithm comprises the steps of data collection, data processing, feature coding, feature optimization and model training and evaluation. The invention furthermore discloses application of the prediction algorithm. According to the algorithm, features of the tyrosine posttranslational modification sites are extracted comprehensively from the perspectives of protein sequence information, evolutional information and physical and chemical properties, Elastic Net is used as an optimization means to automatically select variables to screen multidimensional features, redundant information is removed, a prediction model of tyrosine nitration, sulfuration and phosphorylation sites is constructed in combination with an SVM, the prediction capability of the prediction model is improved, and the prediction quality of the tyrosine posttranslational modification sites is remarkably improved. Through a developed prediction software platform TyrPred, predictive analysis of nitration modification sites, sulfuration modification sites and phosphorylation modification sites of tyrosine on intact protein is realized, and a convenient, economical and rapid research tool and important reference are provided for research of tyrosine posttranslational modification.
Owner:NANCHANG UNIV

Detection of Disease Associated Proteolysis

Described herein are methods and techniques to study the “degradome”. The degradome of a specific protease is the complete product of the natural substrate repertoire of that enzyme in a cell, tissue or organism. The complete set of proteases that are expressed at a particular moment or circumstance by a cell, tissue or organism produces the collective degradome. Included in the methods described herein are approaches that allow the direct identification and characterization of degradome peptides from approx. 400 to approx. 12,000 Da. The methods of the invention avoid the inherent problems of studying the peptidome by focusing on specific or unique proteolytic cleavages that occur as a result of endogenous protease activity induced by specific diseases. Once characterized, the presence of, or change in level of, specific peptides of the degradome can be used, e.g., to identify specific peptides having elevated levels compared to a reference normal/or to correlate identified peptides with specific proteins and/or to identify protein fragmentation patterns (e.g., peptide ladders) and the specific protease(s) that brought them about and then correlate this information with the presence or absense of a specific disease or condition. Thus, the methods of the invention can be used, for example, to identify new diagnostic markers and/or therapeutic targets, as specific clinical diagnostic methods for individual patients and as methods of monitoring the progress of a therapeutic regimen for the treatment of a patient.
Owner:NORTHEASTERN UNIV

Quantitative analysis method for intact protein under different physiological or pathological conditions

The invention relates to a quantitative analysis method for intact protein under different physiological or pathological conditions. The method comprises firstly taking two groups of intact protein under different physiological or pathological conditions respectively as a control group and a disease group, and performing reduction and alkylation; performing chemical protection on epsilon-amino on lysine residue in the two groups of the alkylated protein sequences; performing isobaric marking on the N-end amino of the two groups of protein subjected to chemical protection; mixing the two groups of protein subjected to isobaric marking according to equal proportions, and performing high-resolution mass spectrometry and tandem mass spectrometry analysis to obtain a data set; and performing qualitative and quantitative database search on the data set, so as to obtain protein ID and the relative proportion of each protein relative to the protein in the control group, in other words, the up-regulation or down-regulation situations of all protein under disease conditions. Compared with the prior art, the method is high in marking efficiency and high in accuracy, and is suitable for quantitative analysis on intact protein based on high-resolution tandem mass spectrometry.
Owner:TONGJI UNIV

Method for controlling transgene flow by using gene split

The invention discloses a method for controlling transgene flow by using gene split, and belongs to the technical field of genetically modified organism safety. The method is characterized in that: a complete target gene is splited into an N-terminal sequence and a C-terminal sequence; the N-terminal sequence and the C-terminal sequence are respectively ligated with the gene sequence of the N-terminal splicing domain of the Intein gene and the gene sequence of the C-terminal splicing domain of the Intein gene to form a fusion gene A and a fusion gene B; the fusion gene A and the fusion gene B are transferred into a nuclear genome of a receptor plant through technical means of agrobacterium tumefaciens transformation and hybridization, or the fusion gene A is transferred into the nuclear genome while the fusion gene B is transferred into the chloroplast genome to obtain the gene-splited transgenic plant; after the two fusion genes are expressed in the transgenic plant, two inactive protein fragments are reassembled into active and complete protein in the chloroplast genome or the nuclear genome through Intein-mediated protein-splicing function. According to the method provided by the present invention, environment risk due to the transgene flow can be reduced.
Owner:THE INST OF BIOTECHNOLOGY OF THE CHINESE ACAD OF AGRI SCI
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