The application discloses a kind of Top-Down
mass spectrum
protein identification methods based on
deep learning, comprising: the Top-Down
mass spectrum data of the
complete protein form to be identified is preprocessed and encoded to obtain spectrum vector representation;By peak
encoder, its encoding obtains spectrum latent feature representation;The precursor monoisotopic
mass and the distribution of multiple charge state are jointly embedded to obtain prior constraint vector;With spectrum peak
energy distribution, monoisotopic mass is adaptively segmented to obtain sub-section mass budget;Sequence decoder performs
beam search constrained by mass budget in each subsection and splices into skeleton sequence;By
diffusion model,
low confidence area is iteratively refined in multiple steps, and the denoising process is jointly guided by global
mass consistency, local fragment matching degree and modification site compatibility, and outputs
complete protein form containing post-translational modification site
annotation and
confidence score thereof.The application does not need to be
cut and
database dependent, can identify long sequence and post-translational modification, significantly improve recognition accuracy and generalization.