The invention provides a high-precision pilot frequency digital phase-locked loop system based on fuzzy region pulse detection. The high-precision pilot frequency digital phase-locked loop system comprises a frequency scale module, a DDS module, a signal pulse conversion module, a pilot frequency group phase coincidence point pulse module, a phase difference measuring and processing module, a voltage-controlled crystal oscillator module, a display module and a power supply module. Compared with an existing high-precision phase-locked loop, a phase discriminator is not needed, a fuzzy region pulse detection method is adopted, the resolution of phase difference measurement is greatly improved, the resolution of phase difference measurement at any moment is better than 1 ps, the synchronization precision of the phase-locked loop is greatly improved, the system structure is integrated through the FPGA technology, the development cost is reduced, the phase noise is suppressed, and the stability and reliability of the system are enhanced.