The invention discloses an auxiliary grid fault analysis system. The auxiliary grid fault analysis system comprises a main control module, wherein the main control module is connected with a plurality of paths of voltage input modules, a plurality of paths of current input modules, a plurality of switching value input modules, a high-capacity storage module, a human-computer interface, an external communication module and an auxiliary grid fault analysis system knowledge base; the three-phase voltage, the three-phase current waveform, the effective value, the period and the frequency are displayed in real time, and the single-phase or three-phase reactive power value, the active power value and the apparent power value are displayed in real time; one to eight alternating quantities are randomly selected from all alternating analog quantity channels, and the phasor diagrams are displayed; the first phasor phase fixedly serves as the reference, other phasors are based on the first phasor phase, drawing is carried out according to the phase corresponding to the reference phasor, and the effective value and the phase angle of the phasors are displayed; the positive sequence effective value, the positive sequence phase angle, the negative sequence effective value, the negative sequence phase angle, the zero sequence effective value and the zero sequence phase angle can be displayed in real time according to three-phase voltage or three-phase current, and the auxiliary grid fault analysis system has two harmonic analysis modes.