The invention is applicable to the field of sample analysis equipment, and discloses a sample analyzer, a sample analysis system, a control method of the sample analyzer and a storage medium. The sample analyzer comprises an analyzer execution main body, a first information acquisition device and a first control device; the analyzer execution main body is configured to be capable of executing a preset item and a sample detection item, and the preset item comprises at least one of a maintenance item, a calibration item and a quality control item; when the analyzer execution main body is executing the preset item and the first control device judges that the sample to be detected enters the sample analyzer according to the sample information fed back by the first information acquisition device, the first control device judges whether to control the pause of the preset item according to a preset pause rule, and if the preset item is judged to be paused, the sample to be detected enters the sample analyzer; if yes, controlling the analyzer execution main body to pause the preset item, and controlling the analyzer execution main body to execute the sample detection item on the to-be-detected sample. Maintenance, calibration and quality control of the sample analyzer and detection efficiency of the to-be-detected sample are considered.