The invention discloses an intelligent electromagnetic information protection system. The system comprises a main control module, a state detection module, a network communication module, a broadbandinterference information source generation module, a targeted comb-shaped information source generation module, a VGA interface module, a DVI interface module, an HDMI interface module, a power supplymodule, an output efficiency detection module, a power output control module, a multi-channel broadband power amplifier and an antenna. The power supply module, the network communication module, thestate detection module, the output efficiency detection module, the power output control module, the broadband interference information source generation module and the targeted comb-shaped information source generation module are all connected with the main control module. According to the system, interface electromagnetic information such as VGA, DVI, HDMI and the like can be automatically and respectively selected to be effectively protected, the interference modes of VGA, DVI and HDMI can be automatically and simultaneously started at high power, and effective electromagnetic protection can be implemented on important secret-related places, large-scale comprehensive display platforms and high-density interconnection interfaces.