The invention discloses a peanut automatic carefully chosen based gynophore removal adaptive matching control system and method. The control system includes a main controller, an elevator motor, an elevator motor driver, a fan, a fan driver, a vibrating screen motor, a vibrating screen motor driver, a disc cutter set motor and a disc cutter set motor driver. Data can be collected by a first stresssensor, a second stress sensor and a dry humidity sensor, the main controller can perform analysis and processing based on the working state of current each motor, so that the adaptive adjusting andmatching of wind speed, cutting handle speed and screen vibration frequencies can be realized, the accuracy of cutting gynophore and the reliable separating of pods and debris can be guaranteed, the quality of peanut pods can be effectively enhanced, the problems of hard extraction and unable feedback of fruits, wind power, speed and other operation data can be solved, and the intelligence and informatization of efficient and accurate handle cutting and pod and debris separating functions can be realized.