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8 results about "Insertion sequence" patented technology

Insertion element (also known as an IS, an insertion sequence element, or an IS element) is a short DNA sequence that acts as a simple transposable element. Insertion sequences have two major characteristics: they are small relative to other transposable elements (generally around 700 to 2500 bp in length) and only code for proteins implicated in the transposition activity (they are thus different from other transposons, which also carry accessory genes such as antibiotic resistance genes). These proteins are usually the transposase which catalyses the enzymatic reaction allowing the IS to move, and also one regulatory protein which either stimulates or inhibits the transposition activity. The coding region in an insertion sequence is usually flanked by inverted repeats. For example, the well-known IS911 (1250 bp) is flanked by two 36bp inverted repeat extremities and the coding region has two genes partially overlapping orfA and orfAB, coding the transposase (OrfAB) and a regulatory protein (OrfA). A particular insertion sequence may be named according to the form ISn, where n is a number (e.g. IS1, IS2, IS3, IS10, IS50, IS911, IS26 etc.); this is not the only naming scheme used, however. Although insertion sequences are usually discussed in the context of prokaryotic genomes, certain eukaryotic DNA sequences belonging to the family of Tc1/mariner transposable elements may be considered to be, insertion sequences.

Specific marker of intergenic region of recd / mtl5 gene of oplegnathus fasciatus, detection method and application

PendingCN122445820ABase JNucleotide
The present application relates to molecular biology technology, specifically to a specific marker of Oplegnathus punctatus recd / mtl5 intergenic region, a detection method and application. The specific marker is a nucleotide sequence of the non-insertion and insertion specific marker of the Oplegnathus punctatus recd / mtl5 intergenic region DNA fragment, wherein the non-insertion sequence is SEQ ID NO: 1, and the insertion sequence is the base shown in SEQ ID NO: 2. Based on the above-mentioned marker, the present application further designs a pair of specific primers: in individuals carrying the DNA insertion variation, two bands of 111 bp and 499 bp can be amplified simultaneously, and the band size difference is 388 bp; in individuals not carrying the insertion variation, only a single band of 111 bp can be amplified. The detection technology has important significance and broad application prospect in the application scenarios of Oplegnathus punctatus gender identification, high-male seed preparation and family selection breeding.
Owner:INST OF OCEANOLOGY - CHINESE ACAD OF SCI

RNA frameworks for gene editing and methods of gene editing

ActiveCN115044583BInsertion deletionProkaryote organisms
The application provides an RNA framework for gene editing and a gene editing method, the RNA framework comprising a sequence upstream of a target site, a sequence to be inserted, and a sequence downstream of the target site in the 5' to 3' direction. The gene editing method is based on the inherent mechanism of eukaryotes, uses RNP or RNA (which can be prepared in vitro) and related proteins as carriers, and is transferred into the cytoplasm and nucleus to realize gene editing on a specific sequence or site on the genome of a target system, such as insertion, deletion, replacement and site replacement of a specific sequence, and has high targeting accuracy. The application is more suitable for further clinical application than other prior art because no exogenous system or substance such as protein derived from prokaryotes is introduced, and no double-strand break is generated.
Owner:隋云鹏

Methods for reprogramming and gene editing cells

PendingUS20260146264A1Fusion with DNA-binding domainVectorsSingle strandOrgan damage
The present disclosure provides improved methods for reprogramming and gene editing cells. In one aspect, the present disclosure provides a method of introducing a single strand break in a DNA site. In one aspect, the present disclosure provides a method of inserting a sequence in a DNA site by introducing a single strand break followed by insertion of the sequence using a single-stranded repair template. In another aspect, the present disclosure provides a method of activating gene expression in a cell during its differentiation. In another aspect, the present disclosure methods and compositions related to iPSC-derived mesenchymal stroma / stem cells that overexpressed IDO1. In another aspect, the present disclosure provides a solid support comprising iPSC-derived mesenchymal stem cells which can be used to treat organ damage.
Owner:FACTOR BIOSCIENCE INC

A transposon insertion variant detection and classification method based on long read sequencing data and related devices

The present application belongs to the technical field of transposon insertion variation, and relates to a transposon insertion variation detection and classification method based on long read sequencing data and a related device. The method comprises: obtaining long read sequencing data and aligning the data with a reference genome; extracting alignment signals and locating candidate insertion regions; obtaining high-confidence insertion events through multi-stage clustering and refining; extracting and standardizing insertion sequence fragments; converting the sequences into numerical features; using a deep learning model to annotate the insertion types, outputting transposon type probabilities; and finally comparing the likelihood values of different genotype hypotheses, selecting the maximum probability genotype and calculating the genotype quality score. The present application solves the problems of low calculation efficiency of traditional sequence alignment-based annotation methods and insufficient accuracy and robustness of sequence classification methods based on large models, and realizes efficient and accurate transposon insertion variation detection and genotype determination.
Owner:XI AN JIAOTONG UNIV

KASP molecular marker of nbeds1 gene, detection method and application thereof

PendingCN122382244ADiseaseMutant allele
The application relates to a KASP molecular marker of an NbEDS1 gene, a detection method and application, and belongs to the technical field of plant molecular breeding. The KASP molecular marker is designed according to a specific 97 bp InDel site in a Nicotiana benthamiana NbEDS1 gene mutant, the wild-type allele is C (containing a 97 bp insertion sequence), the mutant allele is A (the insertion sequence is deleted), the marker has the advantages of high specificity, fast detection speed, low cost, high throughput and high accuracy, and can be applied to genotype identification of the NbEDS1 gene mutant of the Nicotiana benthamiana, rapid screening of mutant materials in related research on a TNL type immune receptor disease resistance pathway, and genetic analysis and breeding selection related to the NbEDS1 gene.
Owner:YUNNAN ACAD OF TOBACCO AGRI SCI

Starfish gender-related in del molecular marker, primer and application thereof

ActiveCN121951020BZooidNucleotide
The present application relates to a kind of star point oriental tile genetic sex related InDel molecular marker, primer and its application, belong to molecular biology field, the molecular marker is located on the male DNA of star point oriental tile, the partial DNA sequence shown in the molecular marker is as shown in SEQ ID NO.1, the InDel molecular marker is a 2bp length insertion sequence, at the 35th and 36th of nucleotide sequence shown in SEQ ID NO.1, the sequence only stably exists in the genome of male individual of star point oriental tile, is deleted in the genome of female individual.This application can accurately and non-invasively identify the genetic sex of star point oriental tile fry and non-breeding season adult fish without killing experimental subjects.
Owner:YELLOW SEA FISHERIES RES INST CHINESE ACAD OF FISHERIES SCI

A high geraniol tea tree molecular marker, marker primer, kit and application and identification method thereof

This invention belongs to the field of molecular biology, specifically relating to a molecular marker, marker primer, kit, and its application and identification method for high geraniol tea plants. By comparing the genomic sequences of tea plant materials with different geraniol contents, this invention discovered that high geraniol tea plant materials have a 261 bp MITE transposon insertion sequence in the promoter region of the CsTPS15 gene, while ordinary tea plant materials lack this sequence at this position. This MITE insertion forms a stable insertion-deletion structural variation and is significantly correlated with the geraniol content of tea plants.
Owner:NORTHWEST A & F UNIV

Integrases and methods of use for efficient insertion of DNA sequences

PCT designated stageWO2026136930A1Stable introduction of DNAFermentationIntegrasesRibosomal DNA
The present disclosure provides, in part, recombinant, mutant Bxb1 integrases which are able to target pseudo-aft sites which are newly discovered "safe harbor" genomic locations, e.g., found in ribosomal DNA (rDNA), and method of engineering nucleic acids and genomic insertion of host cells using the same.
Owner:KOMO BIOSCIENCES INC