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18 results about "Insertion sequence" patented technology

Insertion element (also known as an IS, an insertion sequence element, or an IS element) is a short DNA sequence that acts as a simple transposable element. Insertion sequences have two major characteristics: they are small relative to other transposable elements (generally around 700 to 2500 bp in length) and only code for proteins implicated in the transposition activity (they are thus different from other transposons, which also carry accessory genes such as antibiotic resistance genes). These proteins are usually the transposase which catalyses the enzymatic reaction allowing the IS to move, and also one regulatory protein which either stimulates or inhibits the transposition activity. The coding region in an insertion sequence is usually flanked by inverted repeats. For example, the well-known IS911 (1250 bp) is flanked by two 36bp inverted repeat extremities and the coding region has two genes partially overlapping orfA and orfAB, coding the transposase (OrfAB) and a regulatory protein (OrfA). A particular insertion sequence may be named according to the form ISn, where n is a number (e.g. IS1, IS2, IS3, IS10, IS50, IS911, IS26 etc.); this is not the only naming scheme used, however. Although insertion sequences are usually discussed in the context of prokaryotic genomes, certain eukaryotic DNA sequences belonging to the family of Tc1/mariner transposable elements may be considered to be, insertion sequences.

Construction of fluorescent protein-tagged tubulin and microtubule-binding protein universal bivalent vectors

ActiveCN115896146BSimplify the experimental processShorten the interactive research cycleFermentationVector-based foreign material introductionInsertion sequenceTransgene
The application provides a construction of a fluorescent protein labeled microtubulin and a microtubule binding protein universal bivalent carrier, and the process is as follows: a first stage is to construct a GFP-alpha tubulin carrier, and a second stage is to construct a GFP-alpha tubulin-mCherry universal bivalent co-expression carrier; in the second stage, 35S, mCherry and NOS sequences are inserted into a KpnI enzyme cutting site of a multiple cloning site of the GFP-alpha tubulin carrier constructed in the first stage, and a single nucleic acid enzyme cutting site is inserted into the 5' end and the 3' end of the mCherry sequence, respectively, and the single nucleic acid enzyme cutting site is XbaI, KpnI / Acc65I and AscI sequences, respectively, so as to obtain the universal bivalent carrier. The universal bivalent carrier provided by the application can express two target genes simultaneously, has the fluorescent signals of GFP and mCherry, can quickly and accurately identify a transgenic plant, is convenient for positive seedling screening, can be used for a tobacco transient expression experiment, can shorten an experimental period, and saves time and effort.
Owner:DEZHOU UNIV

Specific marker of intergenic region of recd / mtl5 gene of oplegnathus fasciatus, detection method and application

PendingCN122445820ABase JNucleotide
The present application relates to molecular biology technology, specifically to a specific marker of Oplegnathus punctatus recd / mtl5 intergenic region, a detection method and application. The specific marker is a nucleotide sequence of the non-insertion and insertion specific marker of the Oplegnathus punctatus recd / mtl5 intergenic region DNA fragment, wherein the non-insertion sequence is SEQ ID NO: 1, and the insertion sequence is the base shown in SEQ ID NO: 2. Based on the above-mentioned marker, the present application further designs a pair of specific primers: in individuals carrying the DNA insertion variation, two bands of 111 bp and 499 bp can be amplified simultaneously, and the band size difference is 388 bp; in individuals not carrying the insertion variation, only a single band of 111 bp can be amplified. The detection technology has important significance and broad application prospect in the application scenarios of Oplegnathus punctatus gender identification, high-male seed preparation and family selection breeding.
Owner:INST OF OCEANOLOGY - CHINESE ACAD OF SCI

RNA frameworks for gene editing and methods of gene editing

ActiveCN115044583BInsertion deletionProkaryote organisms
The application provides an RNA framework for gene editing and a gene editing method, the RNA framework comprising a sequence upstream of a target site, a sequence to be inserted, and a sequence downstream of the target site in the 5' to 3' direction. The gene editing method is based on the inherent mechanism of eukaryotes, uses RNP or RNA (which can be prepared in vitro) and related proteins as carriers, and is transferred into the cytoplasm and nucleus to realize gene editing on a specific sequence or site on the genome of a target system, such as insertion, deletion, replacement and site replacement of a specific sequence, and has high targeting accuracy. The application is more suitable for further clinical application than other prior art because no exogenous system or substance such as protein derived from prokaryotes is introduced, and no double-strand break is generated.
Owner:隋云鹏

Nucleic acid editing system, and nucleic acid editing method and use

Provided in the present invention are a nucleic acid editing system, and a nucleic acid editing method and the use. The nucleic acid editing system comprises a framework structure and a cleavage structure. The framework structure comprises an upstream sequence of a target site, a sequence to be inserted and a downstream sequence of the target site; and the cleavage structure comprises an ORF2p protein and a derivative protein thereof. Further provided in the present invention are a nucleic acid editing method using the editing system; and the use of the editing system in the preparation of a drug for preventing and / or treating cancer, gene-related diseases or neurodegenerative diseases.
Owner:SUI YUNPENG

Methods for reprogramming and gene editing cells

The present disclosure provides improved methods for reprogramming and gene editing cells. In one aspect, the present disclosure provides a method of introducing a single strand break in a DNA site. In one aspect, the present disclosure provides a method of inserting a sequence in a DNA site by introducing a single strand break followed by insertion of the sequence using a single-stranded repair template. In another aspect, the present disclosure provides a method of activating gene expression in a cell during its differentiation. In another aspect, the present disclosure methods and compositions related to iPSC-derived mesenchymal stroma / stem cells that overexpressed IDO1. In another aspect, the present disclosure provides a solid support comprising iPSC-derived mesenchymal stem cells which can be used to treat organ damage.
Owner:FACTOR BIOSCIENCE INC

Recombinant vectors for preparing hla / beta2m complex and methods of making and using the same

ActiveCN116004718Beffective stimulationPlay a role in cancer treatmentAntinoxious agentsFermentationAntiendomysial antibodiesSpecific enzyme
The application discloses a recombinant carrier for preparing HLA / beta 2M complex and a preparation method and application thereof, relates to the technical field of antibody preparation of MHC-polypeptide complex, and provides a recombinant carrier for preparing HLA / beta 2M complex, wherein FOS leucine zipper bZIP motif is inserted between NheI / AvrII enzyme cutting sites of an original carrier, JUN leucine zipper bZIP motif is inserted between BsiWI / BlpI enzyme cutting sites, beta 2M gene sequence is inserted between AgeI / NheI enzyme cutting sites, and HLA sequence is inserted between specific enzyme cutting sites, so that the prepared HLA / beta 2M complex has high expression, and the highest expression reaches 92.45 mg / L.
Owner:PUJIAN BIOLOGICAL (WUHAN) TECH CO LTD

Muscle-targeted adeno-associated virus capsid protein, adeno-associated virus containing same, vector and application

The invention provides a muscle-targeted adeno-associated virus capsid protein, an adeno-associated virus containing the muscle-targeted adeno-associated virus capsid protein, a vector and application. The present disclosure provides an adeno-associated virus capsid protein, which comprises a targeting peptide, and the targeting peptide comprises any one of the following amino acid sequences: SEQ ID NO: 1-19. According to the invention, a reasonable design and directed evolution combined method is adopted, and on the basis of a receptor integrin-RGD polypeptide specific binding principle, random amino acids are carried to adapt to construction and screening of the AAV vector of a capsid structure, so that the problems of poor stability of the capsid structure, change of histocompatibility and the like caused by direct insertion of a sequence are avoided; therefore, efficient transduction of muscular tissues is realized, and a reliable platform is provided for gene therapy.
Owner:INNOVEC BIOTHERAPEUTICS

Plant genetic transformation system based on direct delivery, genetic transformation method and application

The invention relates to the technical field of plant genetic transformation, and provides a plant genetic transformation system based on direct delivery, a genetic transformation method and application. An original vector pMKV057 is directionally modified to obtain a modified vector, and the modification method comprises the following steps: replacing an LUC expression cassette of the vector with a modular expression cassette integrated with an epitope tag; the method comprises the following steps: designing multiple cloning sites on a vector, introducing restriction enzyme cutting sites HindIII and EcoRI or HindIII and XbaI, and inserting a Kozak sequence into a 5'end upstream adjacent region of a nucleotide sequence of the multiple cloning sites to obtain a modified vector. And transforming the modified vector into agrobacterium tumefaciens to carry out plant genetic transformation. Through the technical scheme, the problems of low plant genetic transformation efficiency and long transformation time in related technologies are solved.
Owner:YAZHOUWAN NATIONAL LABORATORY +1

Recombinant adeno-associated virus particle containing targeted transcriptional melittin gene as well as preparation method and application of recombinant adeno-associated virus particle

The invention belongs to the technical field of biological medicines, and provides a recombinant adeno-associated virus particle containing a targeted transcriptional melittin gene as well as a preparation method and application of the recombinant adeno-associated virus particle. Wherein the expression cassette containing the targeted transcriptional melittin gene contains a human telomerase reverse transcriptase core promoter, a tetracycline response element, an optimized melittin gene, a ribosome insertion sequence and a human enterokinase light chain-melittin fusion gene. The invention aims to solve the problem of how to realize precise targeted therapy of tumors, effectively kill tumor cells, reduce damage to normal cells to the greatest extent, overcome the limitation of a traditional treatment method and solve the problem of packaging cell death caused by advanced transcription of melittin genes in a recombinant AAV packaging process. And it is ensured that melittin expressed in tumor cells has a natural sequence and activity, and a safer and more effective treatment choice is provided for tumor patients.
Owner:SHANXI UNIV

Universal insertion sequence and application thereof in preparation of multiplex PCR template nucleic acid

The invention discloses a universal insertion sequence and application thereof in preparation of multiple PCR template nucleic acid. The invention provides a universal insertion sequence and a method for preparing multiple PCR template nucleic acid based on the universal insertion sequence, and the method comprises the following steps: firstly, designing universal insertion sequences with different GC contents, and distributing a universal insertion sequence with similar GC content for each multiple PCR target amplicon; the method comprises the following steps: firstly, synthesizing a universal insertion sequence primer, then synthesizing a hybrid PCR primer containing the universal insertion sequence primer and a multiplex PCR target amplicon primer, and introducing the multiplex PCR target amplicon into the universal insertion sequence through one-step PCR amplification, so as to obtain a set of artificial chimeric DNA template containing the multiplex PCR primer, and the artificial chimeric DNA template can be used as multiplex PCR template nucleic acid for developing and optimizing a multiplex PCR system.
Owner:BEIJING CAPITALBIO MEDLAB CO LTD

A transposon insertion variant detection and classification method based on long read sequencing data and related devices

The present application belongs to the technical field of transposon insertion variation, and relates to a transposon insertion variation detection and classification method based on long read sequencing data and a related device. The method comprises: obtaining long read sequencing data and aligning the data with a reference genome; extracting alignment signals and locating candidate insertion regions; obtaining high-confidence insertion events through multi-stage clustering and refining; extracting and standardizing insertion sequence fragments; converting the sequences into numerical features; using a deep learning model to annotate the insertion types, outputting transposon type probabilities; and finally comparing the likelihood values of different genotype hypotheses, selecting the maximum probability genotype and calculating the genotype quality score. The present application solves the problems of low calculation efficiency of traditional sequence alignment-based annotation methods and insufficient accuracy and robustness of sequence classification methods based on large models, and realizes efficient and accurate transposon insertion variation detection and genotype determination.
Owner:XI AN JIAOTONG UNIV

KASP molecular marker of nbeds1 gene, detection method and application thereof

PendingCN122382244ADiseaseMutant allele
The application relates to a KASP molecular marker of an NbEDS1 gene, a detection method and application, and belongs to the technical field of plant molecular breeding. The KASP molecular marker is designed according to a specific 97 bp InDel site in a Nicotiana benthamiana NbEDS1 gene mutant, the wild-type allele is C (containing a 97 bp insertion sequence), the mutant allele is A (the insertion sequence is deleted), the marker has the advantages of high specificity, fast detection speed, low cost, high throughput and high accuracy, and can be applied to genotype identification of the NbEDS1 gene mutant of the Nicotiana benthamiana, rapid screening of mutant materials in related research on a TNL type immune receptor disease resistance pathway, and genetic analysis and breeding selection related to the NbEDS1 gene.
Owner:YUNNAN ACAD OF TOBACCO AGRI SCI

Starfish gender-related in del molecular marker, primer and application thereof

ActiveCN121951020BZooidNucleotide
The present application relates to a kind of star point oriental tile genetic sex related InDel molecular marker, primer and its application, belong to molecular biology field, the molecular marker is located on the male DNA of star point oriental tile, the partial DNA sequence shown in the molecular marker is as shown in SEQ ID NO.1, the InDel molecular marker is a 2bp length insertion sequence, at the 35th and 36th of nucleotide sequence shown in SEQ ID NO.1, the sequence only stably exists in the genome of male individual of star point oriental tile, is deleted in the genome of female individual.This application can accurately and non-invasively identify the genetic sex of star point oriental tile fry and non-breeding season adult fish without killing experimental subjects.
Owner:YELLOW SEA FISHERIES RES INST CHINESE ACAD OF FISHERIES SCI

Takifugu star genetic sex related InDel molecular marker, primer and application thereof

The invention relates to an InDel molecular marker related to genetic sex of Takifugu stellate, a primer and application thereof, and belongs to the field of molecular biology, the molecular marker is located on male DNA of Takifugu stellate, the DNA sequence of the part where the molecular marker is located is as shown in SEQ ID NO.1, the InDel molecular marker is an insertion sequence with the length of 2bp, and at the 35th site and the 36th site of the nucleotide sequence as shown in SEQ ID NO.1, the nucleotide sequence of the primer is as shown in SEQ ID NO.1. The sequence only stably exists in male individual genomes of Takifugu star and is deleted in female individual genomes. According to the method disclosed by the invention, the genetic sex of the fugu stellus fries and the adult fishes in the non-breeding season can be accurately and noninvasively identified on the premise of not killing experimental subjects.
Owner:YELLOW SEA FISHERIES RES INST CHINESE ACAD OF FISHERIES SCI

A novel intravitreal gene therapy for neovascular diseases

PCT designated stageWO2026086836A1Senses disorderAntibody mimetics/scaffoldsDiseaseInsertion sequence
Provided herein relates to the field of biological medicines. Provided are a recombinant AAV(rAAV) particle and use thereof in ophthalmic diseases. The recombinant AAV (rAAV) particle comprises (a) a nucleic acid encoding a polypeptide wherein the polypeptide from N-terminus to C-terminus comprises (i) a first domain that is capable of binding to an angiopoietin; (ii) a second domain derived from VEGFR-1; and (iii) a third domain derived from VEGFR-2; and (b) a capsid protein, wherein the capsid protein is a variant of an AAV2 capsid protein comprising an inserted sequence of VDNASKN at a position between the amino acid positions 587 and 588 of capsid protein VP1 of AAV2. The recombinant AAV (rAAV) particle has a wide application prospect in the treatment of ophthalmic diseases as a safe vector.
Owner:HANGZHOU JIAYIN BIOTECH LTD +2

Recombinase for accurate insertion of DNA sequences in eukaryotic cells

PendingCN121712899AFungiFusion with DNA-binding domainEucaryotic cellDimer
The invention provides a construction body for specifically inserting a DNA (Deoxyribonucleic Acid) fragment and a transgene site into a genome, wherein the construction body comprises recombinase. The enzyme includes a modified HIV-1 integrase (HIV IN) tetramer having a plurality of mutations to facilitate heterodimer construction of the heterodimer wherein a first outer monomer and a second outer monomer are bound to a first inner monomer and a second inner monomer, respectively. A transcriptional activator-like effector (TALE) binds to the N-terminal region of the outer monomer via a polypeptide linker. The two TALEs confer enzyme sequence specificity and prevent non-specific interactions with the target DNA structure. The modified HIV IN monomer ensures the binding of the TALE to the outermost layer monomer and the arrangement of the TALE relative to the catalytic region of the HIV IN. A polynucleotide is bound to an internal monomer of the HIV IN. Upon transport to the nucleus alone or within the lentiviral capsid, the TALE interacts with DNA to locate the HIV IN, which then integrates the polynucleotide.
Owner:RENESSELAER POLYTECHNIC INST +2

A high geraniol tea tree molecular marker, marker primer, kit and application and identification method thereof

This invention belongs to the field of molecular biology, specifically relating to a molecular marker, marker primer, kit, and its application and identification method for high geraniol tea plants. By comparing the genomic sequences of tea plant materials with different geraniol contents, this invention discovered that high geraniol tea plant materials have a 261 bp MITE transposon insertion sequence in the promoter region of the CsTPS15 gene, while ordinary tea plant materials lack this sequence at this position. This MITE insertion forms a stable insertion-deletion structural variation and is significantly correlated with the geraniol content of tea plants.
Owner:NORTHWEST A & F UNIV

Integrases and methods of use for efficient insertion of DNA sequences

PCT designated stageWO2026136930A1Stable introduction of DNAFermentationIntegrasesRibosomal DNA
The present disclosure provides, in part, recombinant, mutant Bxb1 integrases which are able to target pseudo-aft sites which are newly discovered "safe harbor" genomic locations, e.g., found in ribosomal DNA (rDNA), and method of engineering nucleic acids and genomic insertion of host cells using the same.
Owner:KOMO BIOSCIENCES INC