The invention relates to the technical field of
plant molecular breeding, in particular to an
indel marker PH-03-Idel-106 related to the
plant height character of corn and application of the
indel marker PH-03-Idel-106 related to the
plant height character of the corn, the
Indel marker is located in the area of the third
chromosome Chr3: 163962052-163964052 of the corn and is a 7bp
insertion / deletion polymorphism marker, a 7bp
insertion sequence CTGAGGG exists in a high-stalk corn inbred line, and no
insertion sequence exists in a dwarf corn inbred line. A matched specific primer pair PH-03-
Indel-106F / R can specifically amplify a target area, 1.5%
agarose gel electrophoresis detection is carried out, it is judged that the corn plant height marker is a dwarf
haplotype when a 270bp band appears, it is judged that the corn plant height marker is a high-stalk
haplotype when no band exists, and the marker can be used for
molecular marker-assisted selection, breeding improvement and early identification and screening of the corn plant height character. Phenotypes can be accurately predicted through
DNA detection in the
seedling stage, and environmental interference is avoided. The method has the advantages of being high in specificity, simple and convenient to detect, low in cost, high in
throughput and the like, the breeding period can be remarkably shortened, directional improvement of the plant height character is achieved, and the method has important significance on corn variety genetic breeding and plant type optimization.