The invention discloses a planting method of organic paddy rice. The planting method of the organic paddy rice comprises comprehensive management to the paddy rice including substrate treatment, soil treatment, disease control, pest control and weed control, and has the advantages that EM (effective microorganism) compost is used, so that quantities of bacteria, fungus and actinomyces, microbial activity and organic content of soil are improved; the disease resistance of rice seeds and seedlings is improved by soaking seeds and seedlings by EM solution and spraying bacterium solution and lime sulphur, and the generation and diffusion of rice blast can be effectively controlled by planting different varieties of paddy rice at intervals in a paddy field; pest eggs and larvae in the paddy field can be killed by culturing loaches, river crabs or ducks or by light trap and the like; the growth of weeds can be inhibited by green manure; rice chaff can consume oxygen in water so as to hinder the root development and seed germination of the weeds and hinder photosynthesis of the weeds. Compared with current disease prevention method which kills pests by pesticides, the planting method of the organic paddy rice completely eradicates harm of pesticide residue on soil foods, and can ensure yield at the same time, thus being an effective method for producing the organic paddy rice.