The invention discloses a biocompatible miniature frictional generator. The biocompatible miniature frictional generator consists of an upper pole plate nylon 66 coating layer, an upper pole plate poly-L-lactic acid macromolecule pair frictional layer, a lower pole plate ethyl cellulose pair frictional layer and a lower pole plate nylon 66 coating layer, wherein an upper pole plate material is an insulation type plate material formed by poly-L-lactic acid, and electrons are easily obtained; a lower pole plate is an insulation type plate material formed by ethyl cellulose, and electrons are easily lost; patterns in different shapes are manufactured on contact interfaces of the upper and lower pole plates, the upper and lower pole plates are in tight contact in a concave-convex opposite manner to form an arc-shaped space, and the space is packaged by a biocompatible nylon 66 film. The biocompatible miniature frictional generator has the advantages that the miniature generator is simple in structure, small in size and easy to operate; after the generator is inserted in vivo, micro voltage and micro current are generated by extrusion friction such as organism exercise, external massage and vibration; the generator can serve as a power supply of miniature diagnosis and treatment equipment implanted in vivo, and is widely applied to the medical fields of diagnosis, quick treatment, organ regeneration and the like.