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69 results about "Toxicity data" patented technology

Method for forecasting acute toxicity of organic compounds by building quantitative structure-activity relationship model with quantum chemistry method

InactiveCN103646180APredict toxicityChemical property predictionSpecial data processing applicationsMolecular orbital energyAb initio quantum chemistry methods
The invention discloses a method for forecasting the acute toxicity of organic compounds by building a quantitative structure-activity relationship model with a quantum chemistry method. The method fully geometrically optimizes compound structures by using a Gaussian procedure so as to obtain quantum chemistry parameters including molecular volume, relative molecular mass, highest occupied molecular orbital energy, lowest unoccupied molecular orbital energy, energy gaps of frontier molecular orbital, dipole moment, solvation energy, electron energy and the like; using the quantum chemistry parameters and a hydrophobicity parameter as structural descriptors; in combination with toxicity data, quantitative relationship equations between various structural descriptors and toxicity are established according to a written procedure based on partial least square stepwise linear regression to obtain the multiple correlation coefficient, F-test value and sum of squared residuals, and then the model is verified so as to guarantee the external predictive ability. Therefore, the method can quickly and effectively forecast the toxicity of organic compounds to be studied, and provide necessary basic data for risk assessment and supervision of chemicals.
Owner:SHANDONG UNIV

Method for predicting compound carcinogenic toxicity based on complex sampling and improved decision forest algorithm

InactiveCN101587510AEquilibrium predictive powerSpecial data processing applicationsVirtual screeningAlgorithm
The invention relates to a method for predicting compound carcinogenic toxicity based on complex sampling and an improved decision forest algorithm. The method is suitable for calculating carcinogenic toxicity evaluation and virtual selection on a compound according to an organic small molecular structure, and comprises the following steps: firstly, adopting a relative force field to molecules with the molecular structure to carry out optimization and charge calculation, carrying out complex sampling to the compound with centralized original training to be used for generating a training subset, and fixing various relative descriptors in composition calculation molecules of descriptors according to a complex sampling algorithm result; secondly, optimizing a descriptor pool by using a method based on relative matrix analysis and factor analysis; and finally, carrying out data mining on carcinogenic toxicity data and corresponding chemical characteristics thereof of training set molecules by using the improved decision forest method to obtain a classified prediction confidence interval, a carcinogenic toxicity prediction mold and a judgment rule. The method has favorable application prospect in high throughput virtual selection and calculating the carcinogenic toxicity evaluation.
Owner:SHANGHAI INST OF MATERIA MEDICA CHINESE ACAD OF SCI

Model-estimation-based biological toxicity estimation method

The invention relates to the field of estimation of toxic substances in environments, and specifically discloses a model-estimation-based biological toxicity estimation method, which comprises the following steps of 1, selecting a surrogate species; 2, performing toxicity estimation to obtain toxicity data of an unknown species by virtue of the surrogate species; 3, screening estimation data. The biological toxicity estimation method is applied to toxicity researches on species, and a water quality criterion deduction case research on zinc laterally proves feasibility in toxicity estimation of a species with an ICE (Interspecies Correction Estimation) model, so that the problem of incapability of accurately deducing a water quality criterion due to insufficient toxicity data of a part of pollutants is solved; damage to an experimental organism is avoided, and environmental pollution is reduced, so that a rapid, simple and environment-friendly biological toxicity research method is provided; under the condition of water quality criterion and risk assessment and the like with a requirement on a large amount of biological toxicity data for analysis, if data of a part of pollutants is insufficient, the toxicity estimation method is more economical and convenient.
Owner:CHINESE RES ACAD OF ENVIRONMENTAL SCI

QSAR (Quantitative Structure Activity Relationship) toxicity prediction method for evaluating health effect of nano-crystalline metal oxide

The invention relates to the field of toxic substance prediction in an environment, in particular to a QSAR (Quantitative Structure Activity Relationship) toxicity prediction method for evaluating the health effect of nano-crystalline metal oxide. The method comprises the steps of predicting the toxicity endpoint of unknown metallic oxide according to a quantitative relation between structural features and cytotoxicity effect of the nano-crystalline metal oxide; building a nano-crystalline metal oxide prediction model by combining the physicochemical structure parameter and a special mechanism of toxication of the nano-crystalline metal oxide, and applying the nano-crystalline metal oxide prediction model to predict the toxicity endpoint of the unknown metallic oxide. According to the QSAR toxicity prediction method provided by the invention, based on a function model and the toxicity prediction method of the nano-crystalline metal oxide, and the nano-crystalline metal oxide prediction model can be built to predict an unknown toxicity value through the QSAR model method, therefore the toxicity endpoint prediction of various compounds lack of toxicity data can be completed quickly and simply with less dependency.
Owner:CHINESE RES ACAD OF ENVIRONMENTAL SCI

Determination method for ecological risks of polycyclic aromatic hydrocarbon in water body

The invention discloses a determination method for ecological risks of a polycyclic aromatic hydrocarbon in a water body and belongs to the field of determination of ecological risks. The determination method comprises the following steps: (1) representative species of a water ecological system in a region are screened; (2) toxicity data of benzoapyrene is obtained; (3) benzoapyrene concentration values HC5 of 95% of species of the water ecological system are calculated; (4) the varieties of polycyclic aromatic hydrocarbon pollutants and corresponding environmental concentrations are determined by sampling and concentration distribution characteristics of various polycyclic aromatic hydrocarbons are analyzed; (5) ecological risk quotient values RQi of the specific polycyclic aromatic hydrocarbon pollutants are calculated; and (6) a total ecological risk quotient value RQt is calculated and the specific ecological risks are defined. According to the determination method, whether potential risks of the polycyclic aromatic hydrocarbon pollutants can be accepted or not can be analyzed and whether the total level of the ecological risks of the water body needs to be controlled or not can be judged so that scientific evidences and the like is provided for making protection measures for the water ecological system and making control measures for polycyclic aromatic hydrocarbon pollution.
Owner:JIANGSU PROVINCIAL ACAD OF ENVIRONMENTAL SCI

Method and system for generating spatially and temporally controllable concentration gradients

InactiveUS20110300570A1Regulate cellular responseProfile can be stabilizedBioreactor/fermenter combinationsBiological substance pretreatmentsBiological studiesCardiac cell
The ability to rapidly generate concentration gradients of diffusible molecules has important applications in many chemical and biological studies. The present invention is directed to methods and systems for generating spatially and temporally controllable concentration gradients of molecules (i.e. proteins or toxins) in a portable microfluidic device. The formation of the concentration gradients can be initiated by an induced forward flow and further optimized during an induced backward flow. The forward and backward flows can be either passively induced and/or actively pumped. The centimeter-length gradients along the microfluidic channel can be spatially and temporally controlled by the backward flow. The gradient profile was stabilized by stopping the flow. In one example, a stabilized concentration gradient of a cardiac toxin, Alpha-cypermethrin, generated according to the invention was used to test the response of HL-1 cardiac cells in the microfluidic device, which correlated with toxicity data obtained from multi-well plates. The invention can be useful for bio-logical and chemical processes that require rapid generation of concentration gradients in a portable microfluidic device.
Owner:THE BRIGHAM & WOMEN S HOSPITAL INC

Method and apparatus for molecular toxicity prediction based on multi-task graph neural network

The invention discloses a method and an apparatus for molecular toxicity prediction based on a multi-task graph neural network. The method comprises the following steps: S1, preparing a toxicity data set, and obtaining toxicity data represented by a chemical molecule standard expression; S2, generating an atomic node eigenvector by using the toxicity data which is obtained in the step S1 and represented by the chemical molecule standard expression; S3, generating a side information eigenvector by using the toxicity data which is obtained in the step S1 and represented by the chemical molecule standard expression; S4, on the basis of the atomic node eigenvector obtained in the step S2 and the side information eigenvector obtained in the step S3, constructing a molecular toxicity prediction model based on a multi-task graph neural network; S5, verifying performance of the model. According to the multi-task graph neural network designed for molecular toxicity datasets, an automatic learning molecular graph structure information model is constructed, and the performance of a toxicity prediction task can be improved by using a multi-task learning method in combination with the relevance between molecular toxicity tasks.
Owner:NANJING UNIV OF POSTS & TELECOMM

An atmospheric pollution binary mixture health risk evaluation method

ActiveCN109583662AScientifically Reasonable Health Risk EstimatesSave labor costHealth-index calculationForecastingMaterial resourcesRelative efficacy
A novel atmospheric pollution binary mixture health risk evaluation method comprises the following steps: obtaining atmospheric pollutant concentration from literature or actual environment monitoring, selecting pollutants with approximate concentration as binary mixed components to be evaluated, and converting the actual environment exposure concentration into in-vitro equivalent concentration; Obtaining transcriptome data of each pollutant and in-vitro biological test information of a specific path from a public database or literature, calculating a mixed effect value of the transcriptome data and the in-vitro biological test information, and correcting a relative efficacy factor and a combined toxicity action mode; Monte Carlo simulation is carried out on the equivalent concentration invitro of the pollutants, relative efficiency factors are coupled and corrected, and the health risk of the mixed pollutants is evaluated. The method is established on the basis of the environmental exposure concentration and the biological test data of the pollutant monomer, can evaluate the health risk of the pollutant monomer without depending on the mixture toxicity data, saves the manpower and material resource cost, and has a wide application prospect in the fields of practical environmental hybrid exposure health risk evaluation, environmental safety evaluation and the like.
Owner:RES CENT FOR ECO ENVIRONMENTAL SCI THE CHINESE ACAD OF SCI

Regional protection aquatic organism water quality benchmark derivation method for optimally controlling heavy metal pollutant chromium

The invention provides a regional protection aquatic organism water quality benchmark derivation method for optimally controlling heavy metal pollutant chromium, which comprises the following steps: collecting and screening toxicity data, screening tested species, importing the screened toxicity data into China-WQC, carrying out model fitting by taking lgSMAV as an abscissa and cumulative probability as an ordinate, determining an optimal fitting model according to a determination coefficient r2, a root mean square RMSE, a residual sum of squares SSE and a K-S test result of model fitting, obtaining a 5% species hazard concentration HC5, selecting an evaluation factor 2, and determining a short-term reference value CMC and a long-term reference value CCC of the fresh water aquatic organisms in combination with a corresponding acute-chronic ratio. According to the method, the difference of water quality standards under different biological zones is fully considered in the derivation process, the national conditions and water environment management criteria of China are better met, and over-protection and under-protection can be effectively avoided. A reference can be provided for deriving a regional heavy metal protection aquatic organism water quality standard.
Owner:INST OF AQUATIC LIFE ACAD SINICA

A method and a device for screening basin water environment risk substances

The embodiment of the invention discloses a method and a device for screening basin water environment risk substances. The method comprises the following steps: obtaining the exposure concentration ofeach pollutant in a target watershed water environment, and comparing the exposure concentration with an environmental safety threshold; obtaining the exposure concentration of the target pollutant greater than an environmental safety threshold value, constructing a cumulative probability distribution curve based on the exposure concentration of the target pollutant, and calculating the probability that the exposure concentration of the target pollutant exceeds the environmental safety threshold value based on the cumulative probability distribution curve; if the probability is greater than the probability threshold value, quantifying the environmental risk of the target pollutant according to preset software based on the pre-acquired aquatic organism toxicity data of the target pollutantand the exposure concentration of the target pollutant, and obtaining the expected environmental risk of the target pollutant based on the quantified environmental risk; and if the expected environmental risk is greater than a preset first expected environmental risk threshold, determining that the target pollutant is a potential environmental risk substance. By applying the method, the screeningefficiency of environmental risk pollutants can be improved.
Owner:CHINESE RES ACAD OF ENVIRONMENTAL SCI
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