The invention discloses a production process of composite probiotics. The process comprises the following specific steps of: 1, breeding, namely (1) preparing a culture solution, and heating, dissolving and saccharifying the culture solution to obtain a saccharified solution; (2) sterilizing the saccharified solution at a high temperature, and cooling the sterilized saccharified solution to obtain a breeding culture medium; and (3) inoculating strains of lactic acid bacteria, bifidobacterium, bacillus subtilis and candida utilis into the breeding culture medium for culturing, thus obtaining four mature bacterium solutions; 2, fermentation, namely (1) mixing and sterilizing bean pulp and bran, thus obtaining a solid material; (2) respectively adding the four mature bacterium solutions into a diluent, thus obtaining four diluted bacterium solutions after diluting; and (3) respectively inoculating strains of the four diluted bacterium solutions into the solid material for fermentation, thus obtaining four fermented materials; and 3, drying and packaging, namely (1) mixing the four fermented materials and drying the mixed materials for the first time; (2) drying the mixed materials for the second time; (3) drying the mixed materials for the third time; and (4) crushing, outputting and packaging the dried materials to obtain the composite probiotics. The process can realize large-scale and continuous production and is suitable for industrial production.