The invention relates to a Chinese herb compound preparation for preventing and controlling the hepatopancreatic necrosis disease in river crab culture, and belongs to the technical field of aquaculture. A preparing method of the Chinese herb compound preparation mainly includes the steps that Lonicera japonica, Rhus chinensis Mill. and Artemisia apiacea are taken and weighed in proportion, water is added for decoction, decoction liquid is evenly mixed with salicylic acid, citric acid and polyhexamethylene biguanidine hydrochloride according to the weight proportion, split charging is conducted, and finally packaging and warehousing are conducted. The Chinese herb plants safe and nontoxic to river crabs are adopted and cooperate with various substances such as organic acid and environment-friendly macromolecular fungicide, and the Chinese herb compound preparation integrates the functions of resisting bacteria and viruses, killing microsporidia, relieving invasion of toxins in a culture environment, preventing the disease and promoting growth, contains definite ingredients, has a wide effect, can be directly splashed, and is convenient to use, high in bioavailability and free of influences of environmental conditions; after the Chinese herb compound preparation is used, the river crab culture ecological environment can be rapidly remediated, heavy metal and pesticide residues in the culture environment can be rapidly reduced, the quantity of microsporidia, bacteria and viruses in the culture environment can be effectively reduced, the incidence probability of the hepatopancreatic necrosis disease of river crabs can be reduced, body tissue can be protected, growth can be promoted, and the river crab culture yield and quality can be improved.