This invention relates to a method of manufacturing the fertilizer made from organic wastes such as food wastes, human excrements, animal excrements, slaugterhouse waste, henhouse waste, fish and shellfish wastes, vegetable wastes and agricultural wastes. Various wastes are mixed and crushed into certain sizes, processes for adjusting the water content, put into the treating tank and digested by mixing a calcined lime. The present invention utilizes a dolomite or mixture of calcined lime and dolomite to provide the first treatment material. This first treatment material is mixed with the supplement material such as charcoal, saw dust, loess, zoelite, chaff, or shell powder to give compost fertilizer. It is also mixed with agricultural products such a watermelons or melons which ferment to provide a special fertilizer for the agricultural product. The treatment material can be added to water and mixed with mugwort, medicinal herb, zeolite, loess, and then extracted to provide a liquid fertilizer. As the various organic wastes are changed to organic fertilizer, the acidified soil is improved, the environmental contamination can be prevented, and the high moisturizing and the fine porous of the soil prevent drought and fertilizer loss so as to raise fertilizing efficiency.