The invention belongs to the technical field of port water conservancy projects, and particularly relates to a fishing port wharf structure suitable for different water levels and a using method of the fishing port wharf structure. The modularized parking unit comprises a supporting vertical plate, a floating air bag, a storage box, a roller shutter type parking plate, a telescopic rod, a limiting bottom plate and a self-adjusting guide mechanism, the floating air bag is connected to the middle of the outer side of the supporting vertical plate, the storage box is fixed to the top of the supporting vertical plate, the telescopic rod is installed at the bottom of the supporting vertical plate, and a storage area and an air pump installation area are arranged in the storage box. The buoyancy adjusting air pump is communicated with the floating air bag, a rolling shaft of the rolling and unrolling assembly is connected with a roller shutter type stopping plate in a winding mode, and a self-adjusting guide mechanism is installed on the inner side of the supporting vertical plate. A plurality of independent modularized parking units are designed to form the fishing port wharf structure, each modularized parking unit serves as a leasing unit, the parking requirements of different small fishing boats are met, and meanwhile the partition leasing requirement of a leasing type fishing port wharf is met.