The invention discloses a method for preparing a low temperature fused salt of an aporate high crystallization magnesium borate crystal whisker by means of a thermal transition, which belongs to the field of inorganic chemical engineering technology. A hydrothermal product alkali magnesium borate crystal whisker is used by the method as a precursor, roasted for 1-5 hours in an air atmosphere of 600-750<DEG C> with an assistance of minim inorganic fused salt, washed, filtered, and dried, thus obtaining the aporate high crystallization magnesium borate crystal whisker with a length of 0.5-20mum, a diameter of 10-100nm, a slenderness ratio of 10-200, and the main content of the aporate high crystallization magnesium borate crystal whisker is bigger than 98 percent. The method has the advantages that raw materials of the invention are cheap and easy to get; the craftwork is simple; the condition is mild; added value of the product is high; an industrialized popularization is easy; the feature of the prepared magnesium borate crystal whisker is regular; the dispersion is good, no holes exists; the crystallization degree is high; an application to industries of magnesium/aluminium alloy, plastics, rubber, and pottery, and the like, as reinforcing material is hopeful.