The invention discloses a time sequence analysis-based storm surge disaster early warning system, which comprises a database server, an early warning prediction model analysis module, an assistant decision making system, a Web server and a management user, wherein the database server stores historical monitoring data, real-time monitoring data, basic geographic information data, emergency plan data, related calculation model data and early warning data; the monitoring data and the early warning data are time sequence data; the early warning prediction model analysis module is mainly used for preprocessing the data, piecewise linearly expressing the time sequence data to fulfill dimension reduction and compression aims, performing similarity matching on the time sequence data and the historical monitoring data, and performing disaster early warning according to a similarity matching result; and the assistant decision making system displays assistant decision making information on the basis of geographical graphic information, and displays the assistant decision making information to a client of the management user through the deployed Web server.