The invention provides a preparation method of an avian chlamydia psittaci polymorphic outer membrane protein (PmpG) protein and an application thereof. The method includes: 1) chlamydia psittaci PmpG protein which comprises primers, vectors, expression conditions and a protein renaturation technology for 17G, 19G, 20G and 21G protein expression are provided; 2) the prepared Pmp20G protein is used as a coating antigen to prepare an ELISA diagnostic kit, the kit has good specificity, sensitivity and repeatability, the coincidence rate of the kit reaches 98.1% compared with a foreign commercial kit, and the kit has no cross reaction with other related respiratory pathogens; 3) the four protein compositions of chlamydia psittaci Pmp17G, 19G, 20G and 21G are used as antigens, and the prepared vaccine has the characteristics of small dosage, high synergistic effect, high immune protection efficacy and the like. and 4) a composition of four proteins of chlamydia psittaci Pmp17G, 19G, 20G and 21G is taken as an antigen, chitosan gel is taken as an adjuvant, and good respiratory mucosa immunity can be generated through an aerial fog immune way, so that infection of the chlamydia psittaci is prevented and treated, and spreading of the chlamydia psittaci from livestock and poultry to people is blocked.