The invention discloses a pesticide storing container and a preparation method thereof. The pesticide storing container comprises an inner layer, a bonding layer I, a blocking layer, a bonding layer II and an outer layer which are sequentially bonded from inside to outside; and the inner layer is prepared from the following components in parts by weight: 10-20 parts of HDPE, 1-5 parts of a flexibilizer, 1-5 parts of a reinforcing agent, 2-6 parts of activated nano calcium carbonate, 3-6 parts of polypropylene, and 1-5 parts of butyronitrile rubber powder. The preparation method of the pesticide storing container comprises the steps: S1, melt extrusion is conducted; S2, blow molding is conducted; and S3, trimming treatment is conducted, specifically, a semi-finished blank product is trimmed, and a finished product is prepared. The pesticide storing container has the advantages of being high in strength, good in toughness and high in falling resistance; and additionally, the preparationmethod has the advantages that the prepared pesticide storing container is good in strength, good in toughness and high in falling resistance.