The invention discloses an automatic compensation device of a phase noise of a Raman laser system based on closed loop feedback and a method thereof. The device comprises a laser source, a beam splitter, an electrooptical modulator, an acoustic optical modulator, a beam combiner, a half-transparent half-reflecting mirror, a phase modulator, a polarizer, a photoelectric detector, a low noise microwave amplifier, a frequency mixer, a low pass filter, an analog-digital converter, an FPGA, a digital-to-analog converter, a low frequency amplifier and a phase shifter. The automatic compensation device and method provided by the invention are capable of automatically adjusting and compensating a phase difference in the Raman laser system and reducing the phase noise caused by the vibration of a light path of the Raman laser system. By adopting the circuit control mode, the advantages of integration, modularization and easy debugging of a control system are achieved.