The invention discloses a GC-EI-MS measurement method for fluoride ether bacteria amide residues. The method is mainly used for measuring the content of fluoride ether bacteria amide remaining in a complex matrix food and agricultural products such as cereal grains and animal derived food. The method comprises the following steps: extracting fluoride ether bacteria amide remaining in a sample in a homogenization manner by virtue of acetonitrile or an acetonitrile solution containing 1 percent of acetic acid, performing purification and concentration by virtue of a C18/PSA solid-phase extraction column, performing GC-EI-MS detection, establishing a corrected standard curve by adopting a vehicle solution free of a pesticide to be measured, and measuring the fluoride ether bacteria amide residues according to an external standard method. According to the method, the average recovery rate is 82.5 to 87.4 percent, the average relative standard deviation (RSD) is 4.4 to 6.4 percent, the detection limit is lower than 0.56[mu]g/kg, the method has the advantages of convenience and high speed in operation, good impurity removal effects, high sensitivity, high repeatability and accurate qualification and quantification, the technical requirement of uniform limit of 0.01mg/kg maximum residue limit can be met, and powerful technical support can be provided for ensuring the food safety of Chinese people and the healthy development of foreign export trade.