The invention discloses a preparation method of compound liquid enzymes. The preparation method comprises the following steps: taking papaya cores, longan cores, litchi cores, peach core and mango cores in parts by weight, then mixing, crushing, soaking in aqueous ethanol, taking soak solution, diluting by water and filtering to obtain the first separated liquid; taking grapes, apples, oranges, pitayas, sugar orange peels, tomatoes, papaya, Hami melon, pomelo flesh, peach flesh, hawthorn fruits, mulberries and brown sugar solution in parts by weight, then mixing aeating to pulp and fermenting the pulp to obtain the first fermentation broth. According to the preparation method, the raw materials not only comprises the fruits with rich nutrients, such as the Hami melon, the pomelo flesh, the peach flesh, the hawthorn fruits, the mulberries and the like, but also comprises three Chinese herbal medicines with very good medical values, including rhizoma polygonati, root of Japanese stemona and asparagus root; the rhizoma polygonati has very good treatment effects to stomach weakness, spleen weakness, body weakness and tiredness and functions of strengthening bone and musculature and invigorating spirit and marrow; the root of Japanese stemona and the asparagus root have very good effects in moistening the lung, relieving cough and eliminating sputum; thus, the compound liquid enzymes have very good health-care effects.