The invention relates to a multifunctional highly efficient counter current chromatograph, which consists of a disc type counter current chromatographic separation column, a counterweight body, a planet carrier, a cylinder rotating axis, a planet wheel, a center wheel, a central revolution axis, an electrical motor, a transmission device, a speed control device and an insulated chassis. The disc type counter current chromatographic separation column comprises at least a or a plurality of discs provided with designing slots, clapboards at two sides of each disc, the cylinder rotating axis, an upper flange and a lower flange; the cylinder rotating axis is hollow and passes through the center of the upper flange, the lower flange, the discs and the clapboards; the inner edge and the outer edge of the upper flange, the lower flange, the discs and the clapboards are provided with a plurality of bolt pieces that fix the upper flange, the lower flange, the discs and the clapboards together. The advantages of the invention lie in that: the fixed phase retention value of a two-phase system comprising an organic phase is further promoted and highly efficient and fast separation of micromolecular substances is realized in high flowing speed. Meanwhile, the retention rate of an aqueous two-phase system is remarkably prompted, thus being applicable for the separation of biomacromolecule.