The invention relates to a seabed-based multipoint in-situ long-term observing system which comprises a platform frame, a floating body material, an underwater sound communication apparatus, a beacon receiver, a monitoring cabin, a control cabin, a release control cabin, a central rotary table, a balancing weight and a microelectrode probing system. A main body of the platform frame is of a cylindrical shape and is divided into four layers from top to bottom; the floating body material, the underwater sound communication apparatus and the beacon receiver are mounted in the first layer, the monitoring cabin, the control cabin and the release control cabin are mounted in the second layer, the central rotary table is mounted in the third layer, and the balancing weight is mounted in the fourth layer. The seabed-based multipoint in-situ long-term observing system provided by the invention effectively realizes a multipoint precise positioning function so as to acquire data of a plurality of probing points in a probing region as required. Finally, spatial distribution information of an active diffusion field can be analyzed to provide an important data support for marine environment effect estimation of oil spill and aquo-complex decomposing process, thereby providing support and service for key projects such as submarine oil extraction and pilot production of natural gas hydrates.