The invention relates to a direct current thawing apparatus with a special rectiformer and a protection method thereof. The direct current thawing apparatus with the special rectiformer comprises an alternating current side power supply circuit breaker QF, an isolating disconnect switch K, a rectiformer, valve side current transformers Ivya, Ivyb, Ivyc, Ivda, Ivdb and Ivdc, a current converter, direct current side voltage transformers Udp and Udn, direct current side current transformers Idp, Idn and Idgnd, and direct current side knife switches S1, S2, S3 and S4. The direct current thawing apparatus has the advantages of reasonable design, low investment and low cost. The protection method ensures the direct current thawing apparatus to satisfy the demand of safe and quick thawing in all circuits, and lowers the investment into the direct current thawing apparatus. The invention has the advantages of ingenious design, favorable performance, low investment, complete protection functions, convenience and high practicality.