Disclosed is a chitosan sustained releasing microsphere fertilizer for effective prevention and treatment of tomato fruit cracking. The chitosan sustained releasing microsphere fertilizer is characterized by being prepared from raw materials of chitin, sodium hydroxide, calcium chloride, zinc sulfate, copper phosphate, acetic acid, glycerin monostearate, cyclohexan, folic acid, glutaraldehyde, petroleum ether, isopropanol, soybean straw, maize straw, livestock faeces, river sludge, urea, monopotassium phosphate, sodium dihydrogen phosphate, and an appropriate amount of water. The prepared chitosan sustained releasing microsphere fertilizer has the integrated characteristics of improving yield, being efficient, having long-acting effects, improving fruit quality and improving soil; meanwhile, the chitosan sustained releasing microsphere fertilizer has the advantages of being low in cost, simple in technology, having no residue and no pollution, saving labor and time during construction and the like.