The invention discloses a multi-species diversification healthy ecological breeding method. The method comprises the step of pond reconstruction. According to the pond reconstruction, a pond of 100 mu is built up into a land area, a shallow area and a deep water area, basically, one third of the pond is the land area, a half of the pond is the shallow area, and the rest is the deep water area. According to the variety throwing amount, one hundred carps, two hundred crucians, fifty spotted silver carps, twenty grass carps, five thousand pacific white shrimps, sixty turtles, three hundred river crabs and five hundred loaches are thrown. Alfalfa is planted in the land area for feeding the grass carps, lotus roots and wild rice shoots are planted in a part of the shallow area, and aquatic commercial crops such as water hyacinth and water spinach are planted in a part of the shallow area. In the deep water area, a cage is used for culturing five hundred tilapias to regulate and control the water quality. According to the planting density, three hundred and fifty kilos of the lotus roots are planted in one mu, three hundred and fifty wild rice shoots are planted in one mu, and the ratio of the medicago plant area to the culture area is larger than one to five.